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The HTLV-1 database contain clinical, phylogenetics and epidemiological data from HTLV-1 sequences.
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Gene
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Protein
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Start position
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Finish position
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gag
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gag
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824
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2114
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The GAG precursor protein is cleaved to generate products
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Name/Protein
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Start position
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Finish Position
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pr55
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824
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1114
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p24 (capsid)
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1214
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1859
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p19 (matrix)
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827
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1217
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Gene
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Protein
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Start position
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Finish position
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pro
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protease
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2092
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2779
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Gene
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Start position
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Finish position
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pol
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2619
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5211
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Name/Protein
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Start position
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Finish position
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pol (polymerase)
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2619
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5211
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p95RT/IN (reverse
transcriptase/integrase)
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2619
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5208
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Gene
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Protein
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Start position
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Finish position
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env
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envelope
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5203
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6670
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The
ENV precursor protein is cleaved to generate products
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Name/Protein
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Start position
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Finish position
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gp46 (surface)
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5203
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6139
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gp21
(transmembrane)
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6139
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6670
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Gene
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Start position
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Finish position
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pol
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2619
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5211
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Name/Protein
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Start position
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Finish position
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pol (polymerase)
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2619
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5211
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p95RT/IN (reverse
transcriptase/integrase)
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2619
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5208
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Gene
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Protein
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Start position
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Finish position
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pX - I
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p12
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6857
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7157
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To
generate the p30 protein and Rex (p27) use a portion of env added to px II
(p30) and px III (Rex), respectively.
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Gene
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Start position
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Finish position
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pX -II
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6853
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7574
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Name/Protein
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Start position
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Finish position
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p30
protein
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6854
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7574
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p13
protein
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7310
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7574
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Gene
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Start position
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Finish position
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pX -III
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7325
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7834
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Name/Protein
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Start position
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Finish position
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p27
(rex)
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7327
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7834
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Gene
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Start position
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Finish position
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pX -IV
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7325
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8382
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Name/Protein
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Start position
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Finish Position
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p40
(tax)
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7326
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8382
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Developed by: Thessika Hialla Almeida Araujo, Leandro Inacio Brito de Souza and Luiz Carlos Junior Alcantara |
Developed in cooperation with the Centro de Pesquisas Gonçalo Moniz/Fundação Oswaldo Cruz (Antonio E. de Albuquerque-Junior),
Escola Bahiana de Medicina e Saúde Publica (Bernardo Galvao-Castro),
Rega Institute at the Katholieke Universiteit Leuven - Belgium (Anne-Mieke Vandamme) and MyBioData - Belgium (Pieter Libin, Koen Deforche).
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Finantial support Brazilian Ministry of Health
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For HTLV-1 database questions please contact: thessika@gmail.com
Suggestions or problems on the program please contact: bioinfo-leandro@bahiana.edu.br
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